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Program 3: Advanced Surveillance Systems

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Developing new disease surveillance support tools and systems to provide disease control authorities with improved scientific basis for decision–making.

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Effective surveillance is essential for early detection of new and exotic diseases, management of disease outbreaks and endemic disease control. Our researchers will address critical gaps in Australia’s surveillance capacity by providing disease control authorities with improved tools for better decision-making.

This program stream focuses on systematically capturing, organising and linking surveillance data from different sources, and developing new decision support tools and systems using spatial analysis and computer modelling.

Current publications 

Hernández-Jover M, Wu M, Schembri N, Holyoake PK and Toribio J-ALML (2008) Technical Note: Evaluation of the official identification system for pigs for sale in New South Wales. Journal of Animal Science 86: 472-475.

Mak D and Watkins RE (2008) Improving the accuracy of Aboriginal and non-Aboriginal disease notification rates using data linkage. BMC Health Services Research 8:118

Martin PAJ (2008) Current value of historical and ongoing surveillance for disease freedom: Surveillance for bovine Johne’s disease in Western Australia. Preventive Veterinary Medicine 84: 291-309.

Australasian region
Map of the Australasian region


Van Hennekeler K, Skerratt L, Fitzpatrick L, Reid S, Bellis G and Jones R (2008) A comparison of trapping methods for Tabanidae (Diptera) in north Queensland, Australia.  Medical and Veterinary Entomology 22: 26-31.

Dailey L, Watkins RE, Riley T and Plant AJ (2007) The potential of pre-diagnostic data sources for influenza surveillance. Australian Infection Control 12: 9-12.

Ritchie S, van den Hurk AF, Zborowski P, Kerlin TJ, Banks D, Walker JA, Lee JM, Montgomery BL, Smith GA, Pyke AT and Smith IL (2007) Operational trials of remote mosquito trap systems for Japanese Encephalitis virus surveillance in the Torres Strait, Australia. Vector-borne and Zoonotic Diseases 7(4):497-506.

Schembri N, Sithole F, Toribio J-ALML, Hernández-Jover M and Holyoake PK (2007) Lifetime traceability of weaner pigs in concrete-based and deep-litter production systems in Australia. Journal of Animal Science 85: 3123-3130.

Schembri N, Toribio J-ALML, Sithole F and Holyoake PK (2007) Review of identification and traceability legislation for pigs in Australia. Australian Veterinary Journal 85: 255-60.
 
Watkins RE, Cooke FC, Donovan RJ, MacIntyre CR, Itzwerth R and Plant AJ (2007) Influenza pandemic preparedness: motivation for protection among small and medium businesses in Australia. BMC Public Health 7: 157.

Useful web sites

 

Veterinary Surveillance Strategy - UK Department for Environment, Food and Rural Affairs

 

Terrestrial Animal Health Code (2004) - World Organisation for Animal Health (OIE)

Associated Projects:
3.004REstimation of prevalence from pooled samples [completed]  
3.008RUsing algorithms based on routine surveillance and GIS to identify and monitor outbreaks of human diseases [completed]  
3.010RQuantification of confidence in disease freedom [completed]  
3.011REMosquito-based surveillance systems for Japanese encephalitis and West Nile virus, with a risk assessment for West Nile virus in eastern Australia [completed]  
3.015REAdvanced Surveillance Systems: Electronic data collection and support [completed]  
3.016REPeri-urban regional surveillance for biosecurity for the pig industry in eastern Australia [completed]  
3.017RImproving bluetongue virus surveillance in remote areas [completed]  
3.018RAdding value to livestock movement data [completed]  
3.036RESpatio-temporal assessment of bluetongue virus (BTV) and Murray Valley encephalitis virus (MVE) host and vector dynamics [completed]  
3.039CRACIAR: The development of sustainable surveillance systems for endemic and exotic diseases in Indonesia  
3.040CRACIAR: The epidemiology, pathogenesis and control of highly pathogenic avian influenza in ducks in Indonesia and Vietnam [completed]  
3.043RDevelopment of novel detection methods for arboviruses [completed]  
3.050RSimulation modelling of urban pandemic influenza in Australia [completed]  
3.055REEpidemiology of avian influenza in aquatic birds in northern Queensland [completed]  
3.066RGIS mapping of cattle market service areas using the National Livestock Identification System (NLIS) [completed]  
3.086RAssessment of the risks to animal biosecurity associated with small landholders [completed]  
H3.47EIPostgraduate project: Elva Cha: A preliminary study of the risks of foot-and-mouth disease involving pigs at agricultural shows (completed)  
H3.54EIPostgraduate project: Kathrin Schemann: Evaluation of post-farm gate disease surveillance for pigs in NSW (completed)  
M3.015REPostgraduate project: Jingyu Zhang: Embedded platform for the Bovine Syndromic Surveillance System (completed)  
M3.11EIPostgraduate project: Tim Chalke: The utilisation of remote sensing and spatial modelling for prediction of Murray Valley encephalitis activity in Western Australia (completed)  
P3.011REPostgraduate project: Cassie Jansen: A risk assessment for West Nile virus in eastern Australia (completed)  
P3.015REPostgraduate project: Richard Shephard: Development of a syndromic surveillance system for remote area cattle production systems in Australia (completed)  
P3.016REPostgraduate project: Nicole Schembri: Peri-urban and remote regional surveillance for biosecurity within the pig industry in eastern Australia (completed)  
P3.036REPost-graduate project: Bernhard Klingseisen: Developing Spatio-Temporal Models of Bluetongue Virus Host and Vector Distribution Based on Bio-Climatic Landscape Metrics  
P3.055REPost-graduate project: MD Hoque : Epidemiological Investigation of Avian Influenza in Waterfowl in Northern Queensland  
P3.105EIPostgraduate project: Simon Firestone: Epidemiological investigations into the 2007 equine influenza outbreak in Australia  
P3.106EIPostgraduate project: Polly Cox: Epidemiological and risk based approaches to accelerate the achievement of OIE Free Zone Status for Foot and Mouth Disease in Malaysia, Thailand and Myanmar.  
P3.12EIPostgraduate project: Ben Madin: Development of Risk Based Strategies for the Successful Management of Animal Movement and the Subsequent Spread of Trans-boundary Animal Diseases in Cambodia and Lao PDR [completed].  
P3.129EIPost-graduate project: Debbie Eagles: The risk of bluetongue virus introduction into Northern Australia via the airborne spread of Culicoides midges from Indonesia  
P3.13EIPostgraduate project: Lynne Dailey: Using hospital data for syndromic surveillance (completed)  
P3.132EIPostgradute project: Michelle Squire: The epidemiology and impact of Clostridium difficile-associated disease in pigs in Australia  
P3.20EIPostgraduate project: Sothyra Tum: Epidemiological studies to support the establishment of a free zone for foot-and-mouth disease and classical swine fever in the Lower Mekong Region of Cambodia and Vietnam  
P3.21EIPostgraduate project: Kyaw Naing Oo: Epidemiological studies to support the establishment of a progressive foot-and-mouth disease zoning approach in Myanmar [completed]  
P3.23EIPostgraduate project: Pebi Purwo Suseno: The development and evaluation of a risk-based strategy for surveillance and rapid response to foot-and-mouth disease in Indonesia  
P3.24EIPostgraduate project: Abbey Bestall: Development of a model for the utilisation of commercial and recreational hunting for surveillance of feral and wildlife species [completed]  
P3.25PDPostgraduate project: Sam Hamilton: Building capacity to model emerging disease threats in the intensive livestock industries  
P3.28EIPostgraduate project: Elaine Llarena: Animal health communication in the control and eradication of epizootic and zoonotic diseases  
P3.30EIPostgraduate project: Jonathan Lee: Trypanosoma evansi in Agile wallabies (Macropus agilis)  
P3.38EIPost-graduate project: Jarunee Siengsanan: Risk assessment of transmission of H5N1 Avian Influenza by wild birds to domestic animals in Thailand [completed]  
P3.39EIPostgraduate project: Tze Hoong Chua: The role of ducks and waterfowl in the epidemiology and ecology of H5N1  
P3.40EIPostgraduate project: Kate Henning: Studies on the epidemiology, pathogenesis and control of highly pathogenic avian influenza (H5N1) in ducks in Vietnam.  
P3.46EIPost-graduate project: Domingo Caro: Animal Health Communication: Defining an Emerging Field and a Model of Practice  
P3.49EIPost-graduate project: Blesilda Verin: The Role and Significance of the Carrier State in the Asian Swamp Buffalo in the Transmission and Control of Foot and Mouth Disease in Southeast Asia  
P3.50EIPost-graduate project: John Stratton: Enhancing disease surveillance for improved health and husbandry of cattle in Cambodia and Laos  
P3.52EIPostgraduate project: Ivan Houisse: Quantitative evaluation of surveillance systems : application to arboviruses surveillance in Australia and enhancement of the methodology  
P3.53EIPostgraduate project: Jingyu Zhang:Improving Interoperability of Epidemiological Systems  
P3.57EUPostgraduate project: Leigh Cuttell: Survey and risk assessment of non-encapsulated forms of Trichinella in mainland Australia  
P3.58EIPostgraduate project: Kinzang Dukpa: Risk based strategies for the control of emerging strains of FMD in Bhutan  
P3.7PDPostgraduate project: Siti Ramanoon: The Epidemiology of foot and mouth disease in Malaysia  
P3.8PDPostgraduate project: Chang Cai: Epidemiology of FMD in the Upper Mekong FMD Zone with particular emphasis on Yunnan Province of PR China  
P3.82EIPostgraduate project: Emma Fuller: NAHIS 2010  
P3.27EIPostgraduate project: Sarah Palmer: Cultural and social factors affecting the management of sheep health and disease (completed)  
P3.26EIPostgraduate project: Toni Cantarella: Producer perspectives on the management of cattle health and disease  
P3.41EIPost-graduate project: John Curran: Spatio-temporal analysis of avian influenza virus exposure in migratory shorebirds and nomadic waterfowl across northern Australia for risk assessment of HPAI incursion to Australia on a wild bird pathway  


Associated Resources:
Enzootic Bovine Leucosis Surveillance Evaluation Report
AB-CRC Surveillance Portfolio in National Context 2005
Student ElvaCha
Student TimChalke
Student TzeHoongChua
Student LynneDailey
Student SamHamilton
Student CassieJansen
Student SarahPalmer
Student NicoleSchembri
Student RichardShephard
Student PebiPurwoSuseno
Student JingYuZhang
Student KyawNaingOo
A preliminary study of the risks of foot-and-mouth disease involving pigs at agricultural shows - Executive summary of thesis
Student JaruneeSiengsanan
Student JohnCurran
Student Elaine Llarena
Student DomingoCaro
Student AbbeyBestall
Student KateHenning
Student BernhardKlingseisen
Student KinzangDukpa
Student MDHoque
Student KathrinSchemann
Student Blesilda Verin
Student LeighCuttell
Student IvanHouisse
Student EmmaFuller
Student JonathanLee
Student JohnStratton
Student PollyCox
Student SimonFirestone


Associated Publications:
Pooled Prevalence Project Final Report
An Evaluation of Surveillance for Enzootic Bovine Leucosis in the Australian Dairy Industry
Emerging diseases: The human health perspective.
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